Sample Set Annotation Tool: Main Listing

Sample Set	Species	Disease	Sample Source	Sample Count
Blood Transcriptional Profiles in Active and Latent Tuberculosis UK (Training Set) - GSE19439	Homo sapiens	Tuberculosis	Whole Blood	42
Dendritic cells-GSE44719_family				77
Denditic cells-GSE56744_family				88
Alarmins MRP8 and MRP14 induce stress-tolerance in phagocytes under sterile inflammatory conditions-GSE61477	Homo sapiens	Sterile Inflammation	Monocytes	12
Effect of vitamin D treatment on human monocytes-GSE56490	Homo sapiens	Healthy	Monocytes, Macrophages ...	16
Interleukin-1- and Type I Interferon-Dependent Enhanced Immunogenicity of an NYVAC-HIV-1 Env-Gag-Pol-Nef Vaccine Vector with Dual Deletions of Type I and Type II Interferon-Binding Proteins-GSE65412	Homo sapiens	Vaccination	Monocytes	20
Macrophage-GSE52894_family				19
Macrophage-GSE4883_family				9
Toll-like receptor triggering of a vitamin D-mediated human antimicrobial response-GSE8921	Homo sapiens	Healthy	Monocytes ...	50
TRAIL Is a Novel Antiviral Protein against Dengue Virus-GSE9378	Homo sapiens	Dengue	Monocytes, B cells ...	10
Innate immune repsonses to TREM-1 activation-GSE9988	Homo sapiens	Healthy	Monocytes	62
Performance comparison of Affymetrix and Illumina microarray technologies-GSE11430	Homo sapiens	Acute coronary syndrome	Monocytes, Macrophages	10
Effect of interferon-gamma on macrophage differentiation and response to Toll-like receptor ligands-GSE11864	Homo sapiens	Healthy	Monocytes	10
Macrophage-GSE13670_family				30
Effects of PMN-Ectosomes on human macrophages-GSE14419	Homo sapiens	Healthy	Macrophages, Neutrophils	16
Expression data from human macrophages -GSE16385	Homo sapiens	Healthy	Monocytes	38
Macrophage-GSE16386_family				8
Macrophage-GSE16755_family				6
Subpopulations of CD163 positive macrophages are classically activated in psoriasis-GSE18686	Homo sapiens	Psoriasis	Macrophages ...	58
THP1-GSE19627_family				9
THP-1-GSE33503_family				4
Traffic-related Particulate Matter Upregulates Allergic Responses by a Notch-pathway Dependent Mechanism-GSE34025	Homo sapiens	Healthy	Monocytes	16
Macrophage-GSE36933_family				16
New insights into key genes and pathways involved in the pathogenesis of HLA-B27-associated acute anterior uveitis-GSE37588	Homo sapiens	Acute anterior uveitis	Monocytes	6
Macrophage-GSE41731_family				24
TREM-1 is a novel therapeutic target in Psoriasis-GSE42305	Homo sapiens	Psoriasis	Monocytes	15
Microarray analysis of IL-10 stimulated adherent peripheral blood mononuclear cells-GSE43700	Homo sapiens	Healthy	Monocytes	8
Nanotoxicogenomic study of ZnO and TiO2 responses-GSE39316	Homo sapiens	Healthy	Monocyte-derived Dendriti ...	90
Similarities and differences between macrophage polarized gene profiles-GSE49240	Homo sapiens	Healthy	Monocytes ...	12
Macrophage-GSE54666_family				12
PGE2-induced OSM expression-GSE36995	Homo sapiens	Inflammation	Macrophages ...	6
Macrophage Microvesicles Induce Macrophage Differentiation and miR-223 Transfer-GSE41889	Homo sapiens	Healthy	Monocytes, Macrophages ...	24
Gene Expression-Based High Throughput Screening: APL Treatment with Candidate Compounds-GSE976	Homo sapiens	Acute Myeloid Leukemia (A ...	Monocytes, Whole Blood ...	24
Gene expression of Peg-interferon alfa-2b plus ribavirin in hepatitis C patients during the first 10 weeks of treatment-GSE11342	Homo sapiens	HCV	PBMC	152
Gene expression profiling in pediatric meningococcal sepsis reveals dynamic changes in NK-cell and cytotoxic molecules-GSE11755	Homo sapiens	Sepsis	Monocytes, Whole Blood ...	41
Human monocyte and dendritic Cell Subtype Gene Arrays-GSE11943	Homo sapiens	Healthy	Monocytes ...	8
Blood Transcriptional Profiles of Active TB (Separated cells)-GSE19443	Homo sapiens	Tuberculosis	Monocytes, CD8 T cells ...	44
Whole Blood-GSE19491	Homo sapiens	Tuberculosis	Monocytes, CD8 T cells ...	498
Ubiquinol-induced gene expression signatures are translated into reduced erythropoiesis and LDL cholesterol levels in humans-GSE21351	Homo sapiens	Healthy	Monocytes, B cells	6
Deconvoluting Early Post-Transplant Immunity Using Purified Cell Subsets Reveals Functional Networks Not Evident by Whole Blood Analysis-GSE24223	Homo sapiens	Kidney Transplantation	Monocytes, B cells ...	179
Direct Cell Conversion of Human Fibroblasts to Monocytic phagocytes by Forced Expression of Monocytic Regulatory Network Elements-GSE27304	Homo sapiens	Dermatomyositis Polymyosi ...	Monocytes, Fibroblast	20
mRNA expression profiling of human immune cell subset (Roche)-GSE28490	Homo sapiens	Healthy	mDC, pDC, Eosinophils ...	47
mRNA expression profiling of human immune cell subsets (HUG)-GSE28491	Homo sapiens	Healthy	Monocytes, Eosinophils ...	33
Comparison study between Uremic patient with Healthy control-GSE43484	Homo sapiens	Uremic	Monocytes	6
The effect of cell subset isolation method on gene expression in leukocytes-GSE50008	Homo sapiens	Healthy	Monocytes, B cells ...	50
Immune Variation Project (ImmVar) [CD14]-GSE56034	Homo sapiens	Healthy	Monocytes	485
Analysis of blood myelomonocytic cells from RCC patients-GSE38424	Homo sapiens	Renal Cell Carcinoma	Monocytes	8
Activation of the JAK/STAT pathway in Behcet’s Disease-GSE61399	Homo sapiens	Behcet Syndrome	Monocytes, CD4 T cells	29
Divergent genome wide transcriptional profiles from immune cell subsets isolated from SLE patients with different ancestral backgrounds-GSE55447	Homo sapiens	Systemic Lupus Erythemato ...	Monocytes, B cells ...	208
Dendritic cells-GSE5547				24
Dendritic cells-GSE6863_family				6
Induction of Dendritic Cell-like Phenotype in Macrophages during Foam Cell Formation-GSE7138	Homo sapiens	Healthy	Monocytes, Macrophages ...	22
Macrophages-GSE8608_family				6
Gene expression data from CD14++ CD16- classical monocytes from healthy volunteers and patients with pancreatic ductal adenocarcinoma-GSE60601	Homo sapiens	Pancreatic ductal adenoca ...	Monocytes	12
Comparative analysis of monocytes from healthy donors, patients with metastatic breast cancer, sepsis or tuberculosis-GSE65517	Homo sapiens	Breast Cancer & Bacterial ...	Monocytes	13
Expression data from intermediate monocytes from healthy donors and autoimmune uveitis patients-GSE66936	Homo sapiens	Autoimmune uveitis patien ...	Monocytes	21
Genomic profiles for human peripheral blood T cells, B cells, natural killer cells, monocytes, and polymorphonuclear cells-GSE72642	Homo sapiens	Healthy	T cells, Monocytes ...	18
Restricted Dendritic Cell and Monocyte Progenitors in Human Cord Blood and Bone Marrow-GSE65128	Homo sapiens	Healthy	pDC, Monocytes	36
Macrophages-GSE60317_family				11
Human blood monocyte response to IL-17A in culture-GSE54884	Homo sapiens	Healthy	Monocytes	6
Monocytes of patients with familial hypercholesterolemia show alterations in cholesterol metabolism-GSE6054	Homo sapiens	Hypercholesterolemia	Monocytes	23
GM-CSF induced gene-regulation in human monocytes-GSE63662	Homo sapiens	Healthy	Monocytes	6
Treatment of human monocytes with TLR7 or TLR8 agonists-GSE64480	Homo sapiens	Healthy	Monocytes	9
PBMCs-GSE6751_family				59
Transcriptional profiling of CD16+ and CD16- peripheral blood monocytes from healthy individuals-GSE16836	Homo sapiens	Healthy	Monocytes	8
Comparison of gene expression profiles between human monocyte subsets-GSE18565	Homo sapiens	Healthy	Monocytes	6
Mycobacterium tuberculosis Chaperonin 60.1 has Bipolar Effects on Human peripheral blood-derived Monocytes-GSE18794	Homo sapiens	Healthy	Monocytes	21
Filaria induced monocyte dysfunction and its reversal following treatment-GSE2135	Homo sapiens	Filariasis	Monocytes	14
No sample Detail-GSE2208_family				19
Gene expression profiling of the classical (CD14++CD16-), intermediate (CD14++CD16+) and nonclassical (CD14+CD16+) human monocyte subsets-GSE25913	Homo sapiens	Healthy	Monocytes	24
Gene expression profiles of human blood classical monocytes (CD14++CD16-), CD16 positive monocytes (CD14+16++ and CD14++CD16+), and CD1c+ CD19- dendritic cells-GSE34515	Homo sapiens	Healthy	Monocytes ...	9
Transcriptome profiles of human monocyte and dendritic cell subsets-GSE35457	Homo sapiens	Healthy	Monocytes ...	49
Inflammatory Expression Profiles in Monocyte to Macrophage Differentiation amongst Patients with Systemic Lupus Erythematosus and Healthy Controls with and without an Atherosclerosis Phenotype-GSE37356	Homo sapiens	Systemic Lupus Erythemato ...	Monocytes, Macrophages	72
Monocytes and Dendritic cells stimulated by 13 human vaccines and LPS-GSE44721	Homo sapiens	Vaccination	Monocytes ...	128
Tumor-educated circulating monocytes are powerful specific biomarkers for diagnosis of colorectal cancer-GSE47756	Homo sapiens	Colorectal cancer	Monocytes	93
T helper lymphocyte- and monocyte-specific type I interferon (IFN) signatures in autoimmunity and viral infection-GSE51997	Homo sapiens	Autoimmune Diseases	T cells, Monocytes	36
BAD_QC_Altered monocyte expression and expansion of non-classical monocyte subset in IgA nephropathy patients-GSE58539	Homo sapiens	Nephropathy	Monocytes	17
Effect of two weeks erythropoietin treatment on monocyte transcriptomes of cardiorenal patients-GSE17582	Homo sapiens	Cardiorenal Syndrome (CRS ...	Monocytes	48
Repeated-GSE18794_family				21
Genome Wide Gene Expression Study of Circulating Monocytes in human with extremely high vs. low bone mass-GSE7158	Homo sapiens	Healthy	Monocytes	26
Dendritic cells-GSE7509_family				26
Expression data from monocytes of individuals with different collateral flow index CFI-GSE7638	Homo sapiens	Coronary artery disease	Monocytes	160
Leukotriene D4 induces gene expression in human monocytes through cysteinyl leukotriene type I receptor-GSE7807	Homo sapiens	Healthy	Monocytes	8
Gene expression profile during monocytes to macrophage differentiation-GSE8286	Homo sapiens	Healthy	Monocytes	9
Interaction of bone marrow stroma and monocytes: bone marrow stromal cell lines cultured with monocytes-GSE10595	Homo sapiens	Healthy	Monocytes ...	8
Monocyte gene expression profiling in familial combined hyperlipidemia and its modification by atorvastatin treatment-GSE11393	Homo sapiens	Familial combined hyperli ...	Monocytes	9
Microarray analysis of human monocytes infected with Francisella tularensis-GSE12108	Homo sapiens	Healthy	Monocytes	14
Human blood monocyte profile in Ventilator-Associated Pneumonia patients-GSE12838	Homo sapiens	Pneumonia	Monocytes, Neutrophils	60
Quercetin supplementation and CD14+ monocyte gene expression-GSE13899	Homo sapiens	Healthy	Monocytes	6
Homogeneous monocytes and macrophages from hES cells following coculture-free differentiation in M-CSF and IL-3-GSE15791	Homo sapiens	Healthy	Monocytes, HUES-2	9
COPD-Specific Gene Expression Signatures of Alveolar Macrophages as well as Peripheral Blood Monocytes Overlap and Correlate with Lung Function-GSE16972	Homo sapiens	Chronic Obstructive Pulmo ...	Monocytes, Macrophages	12
Loss-of-function mutations in REP-1 affect intracellular vesicle transport in fibroblasts and monocytes of CHM patients-GSE17549	Homo sapiens	Choroideremia	Monocytes, Fibroblast	15
Genome-wide analysis of monocytes and T cells' response to interferon beta-GSE34627	Homo sapiens	Healthy	T cells, Monocytes	12
Highly pathogenic influenza virus inhibit Inflammatory Responses in Monocytes via Activation of the Rar-Related Orphan Receptor Alpha (RORalpa)-GSE35283	Homo sapiens	Healthy	Monocytes	12
Influenza virus A infected monocytes-GSE35473	Homo sapiens	Healthy	Monocytes	6
Repeated-GSE37356_family				72
Gene expression profile of human monocytes stimulated with all-trans retinoic acid (ATRA) or 1,25a-dihydroxyvitamin D3 (1,25D3)-GSE46268	Homo sapiens	Healthy	Monocytes	12
Transcriptome analysis of blood monocytes from sepsis patients-GSE46955	Homo sapiens	Sepsis	Monocytes	44
Transcriptome analysis of HIV-infected peripheral blood monocytes-GSE50011	Homo sapiens	HIV	Monocytes	86
Gene expression profiles in T-lymphocytes and Monocytes of participants of the Tour de France 2005-GSE5105	Homo sapiens	Healthy	Monocytes	66
Effects of exercise on gene expression level in human monocytes-GSE51835	Homo sapiens	Healthy	Monocytes	24
Longitudinal comparison of monocytes from an HIV viremic vs avirmeic state-GSE5220	Homo sapiens	HIV	Monocytes	16
Expression data from monocytes and monocyte derived macrophages-GSE52647	Homo sapiens	Healthy	Monocytes	12
Transcriptome analysis of primary monocytes from HIV+ patients with differential responses to therapy-GSE52900	Homo sapiens	HIV	Monocytes	14
Cell Specific Expression in Trauma-Related Human T-Cell and Monocyte Pathways-GSE5580	Homo sapiens	Trauma	T cells, Monocytes ...	42
Transcriptomics of human monocytes-GSE56045	Homo sapiens	Healthy	Monocytes	1202
Repeated-GSE6054_family				23
Monocyte vs Macrophage Study-GSE22373	Homo sapiens	Healthy	Monocytes, Macrophages	6
Monocyte gene expression patterns distinguish subjects with and without atherosclerosis-GSE23746	Homo sapiens	Atherosclerosis	Monocytes	95
Cooperative and redundant signaling of leukotriene B4 and leukotriene D4 in human monocytes-GSE24869	Homo sapiens	Healthy	Monocytes	10
cMyb and vMyb in human monocytes-GSE2816	Homo sapiens	Healthy	Monocytes	6
Temporal transcriptional changes in human monocytes following acute myocardial infarction: The GerMIFs monocyte expression study-GSE28454	Homo sapiens	Acute Myocardial Infarcti ...	Monocytes	76
Changes in gene expression profiles in patients with 5q- syndrome in CD14+ monocytes caused by lenalidomide treatment-GSE31460	Homo sapiens	5q-Syndrome	Monocytes	17
Genome-wide analysis of lupus immune complex stimulation of purified CD14+ monocytes and how this response is regulated by C1q-GSE32278	Homo sapiens	Healthy	Monocytes	8
Transcriptome analysis of circulating monocytes in obese patients before and three months after bariatric surgery-GSE32575	Homo sapiens	Obesity	Monocytes	48
CD4 on human monocytes -GSE32939	Homo sapiens	Healthy	Monocytes	6
Peripheral Blood Monocyte Gene Expression in Recent-Onset Type 1 Diabetes-GSE33440	Homo sapiens	Type 1 Diabetes	Monocytes	22
Human monocyte activation with NOD2L vs. TLR2/1L-GSE34156	Homo sapiens	Healthy	Monocytes	45
Bacillus anthracis' lethal toxin induces broad transcriptional responses in human peripheral monocyte-GSE34407	Homo sapiens	Healthy	Monocytes	8
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