Sample Set Annotation Tool: Genomic profiles for human peripheral blood T cells, B cells, natural killer cells, monocytes, and polymorphonuclear cells-GSE72642

Study Design
Assay
Sample Info
Files
Info
Samples
Group Sets
Analysis

Purpose

To demonstrate the potential use of such cell subtype-specific genomic expression data, a number of the major genes previously reported to be regulated in ischemic stroke, migraine, and Tourette syndrome are shown to be associated with distinct cell populations in blood.

Hypothesis

Experimental Design

This study includes data from major blood cell types from normal individuals. These cell types include CD4+ T cells, CD8+ T cells, CD19+ B cells, CD56+ natural killer cells, CD14+ monocytes and PMN (polymorphonuclear cells). The data were hybridized on 3 separate batches of gene chips.

Experimental Variables

Controls

Methods

Additional Information

Du X, Tang Y, Xu H, Lit L et al. Genomic profiles for human peripheral blood T cells, B cells, natural killer cells, monocytes, and polymorphonuclear cells: comparisons to ischemic stroke, migraine, and Tourette syndrome. Genomics2006 Jun;87(6):693-703. PMID: 16546348

Expected Samples:

18 Samples Loaded: 18

Species

Human (Homo sapiens)

Sample Source

NK Cells , Neutrophils , B cells , Monocytes , T cells

Disease

Healthy

Treatment Protocol

Growth Protocol

Extraction Protocol

Storage Conditions

Sample Set Spreadsheet

Please log in in order to upload files.

Samples Preview

Sample ID	!Sample_title	cell type	tissue	diagnosis
GSM1867065	peripheral blood CD19+ B cells, replicate 1	CD19+ B cells	peripheral blood	healthy
GSM1867066	peripheral blood CD4+ T cells, replicate 1	CD4+ T cells	peripheral blood	healthy
GSM1867067	peripheral blood CD8+ T cells, replicate 1	CD8+ T cells	peripheral blood	healthy
GSM1867068	peripheral blood CD14+ monocytes, replicate 1	CD14+ monocytes	peripheral blood	healthy
GSM1867069	peripheral blood CD56+ NK cells, replicate 1	CD56+ NK cells	peripheral blood	healthy

Please log in in order to upload files.

File

Samples Viewer / Editor

All fields are editable except the "Sample ID" column. To edit a cell, click within the cell. To edit a "date" cell, click on the calendar icon. To cancel an edit, press the ESC key.

Sample ID	!Sample Title	Cell type	Tissue	Diagnosis
GSM1867065	peripheral blood CD19+ B cells, replicate 1	CD19+ B cells	peripheral blood	healthy
GSM1867066	peripheral blood CD4+ T cells, replicate 1	CD4+ T cells	peripheral blood	healthy
GSM1867067	peripheral blood CD8+ T cells, replicate 1	CD8+ T cells	peripheral blood	healthy
GSM1867068	peripheral blood CD14+ monocytes, replicate 1	CD14+ monocytes	peripheral blood	healthy
GSM1867069	peripheral blood CD56+ NK cells, replicate 1	CD56+ NK cells	peripheral blood	healthy
GSM1867070	peripheral blood PMN, replicate 1	polymorphonuclear cells	peripheral blood	healthy
GSM1867071	peripheral blood CD19+ B cells, replicate 2	CD19+ B cells	peripheral blood	healthy
GSM1867072	peripheral blood CD4+ T cells, replicate 2	CD4+ T cells	peripheral blood	healthy
GSM1867073	peripheral blood CD8+ T cells, replicate 2	CD8+ T cells	peripheral blood	healthy
GSM1867074	peripheral blood CD14+ monocytes, replicate 2	CD14+ monocytes	peripheral blood	healthy
GSM1867075	peripheral blood CD56+ NK cells, replicate 2	CD56+ NK cells	peripheral blood	healthy
GSM1867076	peripheral blood PMN, replicate 2	polymorphonuclear cells	peripheral blood	healthy
GSM1867077	peripheral blood CD19+ B cells, replicate 3	CD19+ B cells	peripheral blood	healthy
GSM1867078	peripheral blood CD4+ T cells, replicate 3	CD4+ T cells	peripheral blood	healthy
GSM1867079	peripheral blood CD8+ T cells, replicate 3	CD8+ T cells	peripheral blood	healthy
GSM1867080	peripheral blood CD14+ monocytes, replicate 3	CD14+ monocytes	peripheral blood	healthy
GSM1867081	peripheral blood CD56+ NK cells, replicate 3	CD56+ NK cells	peripheral blood	healthy
GSM1867082	peripheral blood PMN, replicate 3	polymorphonuclear cells	peripheral blood	healthy

Group Sets View in Gene Expression Browser

Name
All Samples		View
Cell Types	Default	View
In order to make new Group Sets or change settings, please log in.

Module Analysis

Group Set
All Samples
Cell Types

SIDRA