Sample Set Annotation Tool: Quercetin supplementation and CD14+ monocyte gene expression-GSE13899

Study Design
Assay
Sample Info
Files
Info
Samples
Group Sets
Analysis

Purpose

Hypothesis

Experimental Design

CD14+ monocytes were isolated from three healthy volunteers before and after a 2 wk supplementation period of 150mg quercetin per day. With this design every subject served as his or her own control (baseline sample = control)

Experimental Variables

Controls

Methods

Additional Information

Boomgaarden I, Egert S, Rimbach G, Wolffram S et al. Quercetin supplementation and its effect on human monocyte gene expression profiles in vivo. Br J Nutr 2010 Aug;104(3):336-45. PMID: 20416132

Expected Samples:

6 Samples Loaded: 6

Species

Human (Homo sapiens)

Sample Source

Monocytes

Disease

Healthy

Treatment Protocol

Growth Protocol

Extraction Protocol

Storage Conditions

Sample Set Spreadsheet

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Samples Preview

Sample ID	!Sample_title	Culture conditions	female	male
GSM350084	CD14+ at baseline, biological replicate 1	CD14 Control	True
GSM350085	CD14+ at baseline, biological replicate 2	CD14 Control		True
GSM350086	CD14+ at baseline, biological replicate 3	CD14 Control	True
GSM350087	CD14+ after 2 wk quercetin supplementation, biological replicate 1	CD14+ Quercetin	True
GSM350088	CD14+ after 2 wk quercetin supplementation, biological replicate 2	CD14+ Quercetin		True

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File
sampleset4000089_sampleannotations.csv Sample Set Spreadsheet

Samples Viewer / Editor

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Sample ID	!Sample Title	Culture conditions	Female	Male
GSM350084	CD14+ at baseline, biological replicate 1	CD14 Control	True
GSM350085	CD14+ at baseline, biological replicate 2	CD14 Control		True
GSM350086	CD14+ at baseline, biological replicate 3	CD14 Control	True
GSM350087	CD14+ after 2 wk quercetin supplementation, biological replicate 1	CD14+ Quercetin	True
GSM350088	CD14+ after 2 wk quercetin supplementation, biological replicate 2	CD14+ Quercetin		True
GSM350089	CD14+ after 2 wk quercetin supplementation, biological replicate 3	CD14+ Quercetin	True

Group Sets View in Gene Expression Browser

Name
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Culture conditions	Default	View
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Module Analysis

Group Set
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Culture conditions

SIDRA