Sample Set Annotation Tool: Genome Wide Gene Expression Study of Circulating Monocytes in human with extremely high vs. low bone mass-GSE7158

Study Design
Assay
Sample Info
Files
Info
Samples
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Analysis

Purpose

To search for genes functionally important for osteoclastogenesis

Hypothesis

Experimental Design

We first recruited 878 healthy Chinese females aged 20-45 y with an average of 27.3 y when PBM is attainted and maintained. Then, we distributed the total sample according to the hip Z-score of PBM. From the bottom 100 and top 100 subjects of the PBM phenotypic distribution, we selected 12 subjects (Low-PBM 1-12) and 14 (High-PBM 1-14) with extremely low and high PBM for further DNA microarray experiments.Total RNA was extracted from monocytes

Experimental Variables

Controls

Methods

Additional Information

Lei S, Deng H

Expected Samples:

26 Samples Loaded: 26

Species

Human (Homo sapiens)

Sample Source

Monocytes

Disease

Healthy

Treatment Protocol

Growth Protocol

Extraction Protocol

Storage Conditions

Sample Set Spreadsheet

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Samples Preview

Sample ID	!Sample_title	Conditions
GSM172405	Monocyte High PBM 1	High PBM
GSM172406	Monocyte High PBM 2	High PBM
GSM172407	Monocyte High PBM 3	High PBM
GSM172408	Monocyte High PBM 4	High PBM
GSM172409	Monocyte High PBM 5	High PBM

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File
sampleset4000080_sampleannotations.csv Sample Set Spreadsheet

Samples Viewer / Editor

All fields are editable except the "Sample ID" column. To edit a cell, click within the cell. To edit a "date" cell, click on the calendar icon. To cancel an edit, press the ESC key.

Sample ID	!Sample Title	Conditions	Monocyte-Low-PBM 9	Monocyte-Low-PBM 12	Monocyte-Low-PBM 10	Monocyte-Low-PBM 11	Monocyte-Low-PBM 1	Monocyte-Low-PBM 2	Monocyte-High-PBM 14	Monocyte-Low-PBM 3	Monocyte-Low-PBM 4	Monocyte-Low-PBM 5	Monocyte-Low-PBM 6	Monocyte-Low-PBM 7	Monocyte-Low-PBM 8	Monocyte-High-PBM 7	Monocyte-High-PBM 8	Monocyte-High-PBM 5	Monocyte-High-PBM 6	Monocyte-High-PBM 10	Monocyte-High-PBM 11	Monocyte-High-PBM 12	Monocyte-High-PBM 9	Monocyte-High-PBM 13	Monocyte-High-PBM 3	Monocyte-High-PBM 4	Monocyte-High-PBM 1	Monocyte-High-PBM 2
GSM172405	Monocyte High PBM 1	High PBM																									True
GSM172406	Monocyte High PBM 2	High PBM																										True
GSM172407	Monocyte High PBM 3	High PBM																							True
GSM172408	Monocyte High PBM 4	High PBM																								True
GSM172409	Monocyte High PBM 5	High PBM																True
GSM172410	Monocyte High PBM 6	High PBM																	True
GSM172411	Monocyte High PBM 7	High PBM														True
GSM172412	Monocyte High PBM 8	High PBM															True
GSM172413	Monocyte High PBM 9	High PBM																					True
GSM172414	Monocyte High PBM 10	High PBM																		True
GSM172415	Monocyte High PBM 11	High PBM																			True
GSM172416	Monocyte High PBM 12	High PBM																				True
GSM172417	Monocyte High PBM 13	High PBM																						True
GSM172418	Monocyte High PBM 14	High PBM							True
GSM172419	Monocyte Low PBM 1	Low PBM					True
GSM172420	Monocyte Low PBM 2	Low PBM						True
GSM172421	Monocyte Low PBM 3	Low PBM								True
GSM172422	Monocyte Low PBM 4	Low PBM									True
GSM172423	Monocyte Low PBM 5	Low PBM										True
GSM172424	Monocyte Low PBM 6	Low PBM											True
GSM172425	Monocyte Low PBM 7	Low PBM												True
GSM172426	Monocyte Low PBM 8	Low PBM													True
GSM172427	Monocyte Low PBM 9	Low PBM	True
GSM172428	Monocyte Low PBM 10	Low PBM			True
GSM172429	Monocyte Low PBM 11	Low PBM				True
GSM172430	Monocyte Low PBM 12	Low PBM		True

Group Sets View in Gene Expression Browser

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