Nanotoxicogenomic study of ZnO and TiO2 responses-GSE39316
To identify signaling pathways underlying the cytotoxicity caused by ZnO nanoparticles.
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Altogether 90 samples were analyzed originating from three biological replicates of HMDM, MDDC or Jurkat cells containg untreated control cells, ZnO or TiO2 treated cells with doses 1µg/ml and 10µg/ml. The sample timepoints were 6 hours and 24 hours.
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HMDM and Jurkat cells were seeded in 24-well plates at a density of 1×106 cells/well and 1.5×105 cells/well respectively in a final volume of 1 ml and treated with the indicated concentrations of nanoparticles for the indicated times [7]. Immature MDDC were seeded in 6-well plates at a density of 4×105 cells/ml in a final volume of 3 ml [23]. Nanoparticle exposures were done in the culturing mediums without any cytokines.
Sample ID | !Sample_title | timepoint | treatment | cell type |
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GSM960767 | MDDC_rep1_ctr_6h_0 | 6h | untreated | MDDC |
GSM960768 | MDDC_rep1_ctr_24h_0 | 24h | untreated | MDDC |
GSM960769 | MDDC_rep1_TiO2_6h_1 | 6h | TiO2 1µg/ml | MDDC |
GSM960770 | MDDC_rep1_TiO2_6h_10 | 6h | TiO2 10µg/ml | MDDC |
GSM960771 | MDDC_rep1_TiO2_24h_1 | 24h | TiO2 1µg/ml | MDDC |
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Sample ID | !Sample Title | Timepoint | Treatment | Cell type |
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GSM960767 | MDDC_rep1_ctr_6h_0 |
6h |
untreated |
MDDC |
GSM960768 | MDDC_rep1_ctr_24h_0 |
24h |
untreated |
MDDC |
GSM960769 | MDDC_rep1_TiO2_6h_1 |
6h |
TiO2 1µg/ml |
MDDC |
GSM960770 | MDDC_rep1_TiO2_6h_10 |
6h |
TiO2 10µg/ml |
MDDC |
GSM960771 | MDDC_rep1_TiO2_24h_1 |
24h |
TiO2 1µg/ml |
MDDC |
GSM960772 | MDDC_rep1_TiO2_24h_10 |
24h |
TiO2 10µg/ml |
MDDC |
GSM960773 | MDDC_rep1_ZnO_6h_1 |
6h |
ZnO 1µg/ml |
MDDC |
GSM960774 | MDDC_rep1_ZnO_6h_10 |
6h |
ZnO 10µg/ml |
MDDC |
GSM960775 | MDDC_rep1_ZnO_24h_1 |
24h |
ZnO 1µg/ml |
MDDC |
GSM960776 | MDDC_rep1_ZnO_24h_10 |
24h |
ZnO 10µg/ml |
MDDC |
GSM960777 | MDDC_rep2_ctr_6h_0 |
6h |
untreated |
MDDC |
GSM960778 | MDDC_rep2_ctr_24h_0 |
24h |
untreated |
MDDC |
GSM960779 | MDDC_rep2_TiO2_6h_1 |
6h |
TiO2 1µg/ml |
MDDC |
GSM960780 | MDDC_rep2_TiO2_6h_10 |
6h |
TiO2 10µg/ml |
MDDC |
GSM960781 | MDDC_rep2_TiO2_24h_1 |
24h |
TiO2 1µg/ml |
MDDC |
GSM960782 | MDDC_rep2_TiO2_24h_10 |
24h |
TiO2 10µg/ml |
MDDC |
GSM960783 | MDDC_rep2_ZnO_6h_1 |
6h |
ZnO 1µg/ml |
MDDC |
GSM960784 | MDDC_rep2_ZnO_6h_10 |
6h |
ZnO 10µg/ml |
MDDC |
GSM960785 | MDDC_rep2_ZnO_24h_1 |
24h |
ZnO 1µg/ml |
MDDC |
GSM960786 | MDDC_rep2_ZnO_24h_10 |
24h |
ZnO 10µg/ml |
MDDC |
GSM960787 | MDDC_rep3_ctr_6h_0 |
6h |
untreated |
MDDC |
GSM960788 | MDDC_rep3_ctr_24h_0 |
24h |
untreated |
MDDC |
GSM960789 | MDDC_rep3_TiO2_6h_1 |
6h |
TiO2 1µg/ml |
MDDC |
GSM960790 | MDDC_rep3_TiO2_6h_10 |
6h |
TiO2 10µg/ml |
MDDC |
GSM960791 | MDDC_rep3_TiO2_24h_1 |
24h |
TiO2 1µg/ml |
MDDC |
GSM960792 | MDDC_rep3_TiO2_24h_10 |
24h |
TiO2 10µg/ml |
MDDC |
GSM960793 | MDDC_rep3_ZnO_6h_1 |
6h |
ZnO 1µg/ml |
MDDC |
GSM960794 | MDDC_rep3_ZnO_6h_10 |
6h |
ZnO 10µg/ml |
MDDC |
GSM960795 | MDDC_rep3_ZnO_24h_1 |
24h |
ZnO 1µg/ml |
MDDC |
GSM960796 | MDDC_rep3_ZnO_24h_10 |
24h |
ZnO 10µg/ml |
MDDC |
GSM960797 | HMDC_rep1_ctr_6h_0 |
6h |
untreated |
HMDM |
GSM960798 | HMDC_rep1_ctr_24h_0 |
24h |
untreated |
HMDM |
GSM960799 | HMDC_rep1_TiO2_6h_1 |
6h |
TiO2 1µg/ml |
HMDM |
GSM960800 | HMDC_rep1_TiO2_6h_10 |
6h |
TiO2 10µg/ml |
HMDM |
GSM960801 | HMDC_rep1_TiO2_24h_1 |
24h |
TiO2 1µg/ml |
HMDM |
GSM960802 | HMDC_rep1_TiO2_24h_10 |
24h |
TiO2 10µg/ml |
HMDM |
GSM960803 | HMDC_rep1_ZnO_6h_1 |
6h |
ZnO 1µg/ml |
HMDM |
GSM960804 | HMDC_rep1_ZnO_6h_10 |
6h |
ZnO 10µg/ml |
HMDM |
GSM960805 | HMDC_rep1_ZnO_24h_1 |
24h |
ZnO 1µg/ml |
HMDM |
GSM960806 | HMDC_rep1_ZnO_24h_10 |
24h |
ZnO 10µg/ml |
HMDM |
GSM960807 | HMDC_rep2_ctr_6h_0 |
6h |
untreated |
HMDM |
GSM960808 | HMDC_rep2_ctr_24h_0 |
24h |
untreated |
HMDM |
GSM960809 | HMDC_rep2_TiO2_6h_1 |
6h |
TiO2 1µg/ml |
HMDM |
GSM960810 | HMDC_rep2_TiO2_6h_10 |
6h |
TiO2 10µg/ml |
HMDM |
GSM960811 | HMDC_rep2_TiO2_24h_1 |
24h |
TiO2 1µg/ml |
HMDM |
GSM960812 | HMDC_rep2_TiO2_24h_10 |
24h |
TiO2 10µg/ml |
HMDM |
GSM960813 | HMDC_rep2_ZnO_6h_1 |
6h |
ZnO 1µg/ml |
HMDM |
GSM960814 | HMDC_rep2_ZnO_6h_10 |
6h |
ZnO 10µg/ml |
HMDM |
GSM960815 | HMDC_rep2_ZnO_24h_1 |
24h |
ZnO 1µg/ml |
HMDM |
GSM960816 | HMDC_rep2_ZnO_24h_10 |
24h |
ZnO 10µg/ml |
HMDM |
GSM960817 | HMDC_rep3_ctr_6h_0 |
6h |
untreated |
HMDM |
GSM960818 | HMDC_rep3_ctr_24h_0 |
24h |
untreated |
HMDM |
GSM960819 | HMDC_rep3_TiO2_6h_1 |
6h |
TiO2 1µg/ml |
HMDM |
GSM960820 | HMDC_rep3_TiO2_6h_10 |
6h |
TiO2 10µg/ml |
HMDM |
GSM960821 | HMDC_rep3_TiO2_24h_1 |
24h |
TiO2 1µg/ml |
HMDM |
GSM960822 | HMDC_rep3_TiO2_24h_10 |
24h |
TiO2 10µg/ml |
HMDM |
GSM960823 | HMDC_rep3_ZnO_6h_1 |
6h |
ZnO 1µg/ml |
HMDM |
GSM960824 | HMDC_rep3_ZnO_6h_10 |
6h |
ZnO 10µg/ml |
HMDM |
GSM960825 | HMDC_rep3_ZnO_24h_1 |
24h |
ZnO 1µg/ml |
HMDM |
GSM960826 | HMDC_rep3_ZnO_24h_10 |
24h |
ZnO 10µg/ml |
HMDM |
GSM960827 | Jurkat_rep1_ctr_6h_0 |
6h |
untreated |
Jurkat |
GSM960828 | Jurkat_rep1_ctr_24h_0 |
24h |
untreated |
Jurkat |
GSM960829 | Jurkat_rep1_TiO2_6h_1 |
6h |
TiO2 1µg/ml |
Jurkat |
GSM960830 | Jurkat_rep1_TiO2_6h_10 |
6h |
TiO2 10µg/ml |
Jurkat |
GSM960831 | Jurkat_rep1_TiO2_24h_1 |
24h |
TiO2 1µg/ml |
Jurkat |
GSM960832 | Jurkat_rep1_TiO2_24h_10 |
24h |
TiO2 10µg/ml |
Jurkat |
GSM960833 | Jurkat_rep1_ZnO_6h_1 |
6h |
ZnO 1µg/ml |
Jurkat |
GSM960834 | Jurkat_rep1_ZnO_6h_10 |
6h |
ZnO 10µg/ml |
Jurkat |
GSM960835 | Jurkat_rep1_ZnO_24h_1 |
24h |
ZnO 1µg/ml |
Jurkat |
GSM960836 | Jurkat_rep1_ZnO_24h_10 |
24h |
ZnO 10µg/ml |
Jurkat |
GSM960837 | Jurkat_rep2_ctr_6h_0 |
6h |
untreated |
Jurkat |
GSM960838 | Jurkat_rep2_ctr_24h_0 |
24h |
untreated |
Jurkat |
GSM960839 | Jurkat_rep2_TiO2_6h_1 |
6h |
TiO2 1µg/ml |
Jurkat |
GSM960840 | Jurkat_rep2_TiO2_6h_10 |
6h |
TiO2 10µg/ml |
Jurkat |
GSM960841 | Jurkat_rep2_TiO2_24h_1 |
24h |
TiO2 1µg/ml |
Jurkat |
GSM960842 | Jurkat_rep2_TiO2_24h_10 |
24h |
TiO2 10µg/ml |
Jurkat |
GSM960843 | Jurkat_rep2_ZnO_6h_1 |
6h |
ZnO 1µg/ml |
Jurkat |
GSM960844 | Jurkat_rep2_ZnO_6h_10 |
6h |
ZnO 10µg/ml |
Jurkat |
GSM960845 | Jurkat_rep2_ZnO_24h_1 |
24h |
ZnO 1µg/ml |
Jurkat |
GSM960846 | Jurkat_rep2_ZnO_24h_10 |
24h |
ZnO 10µg/ml |
Jurkat |
GSM960847 | Jurkat_rep3_ctr_6h_0 |
6h |
untreated |
Jurkat |
GSM960848 | Jurkat_rep3_ctr_24h_0 |
24h |
untreated |
Jurkat |
GSM960849 | Jurkat_rep3_TiO2_6h_1 |
6h |
TiO2 1µg/ml |
Jurkat |
GSM960850 | Jurkat_rep3_TiO2_6h_10 |
6h |
TiO2 10µg/ml |
Jurkat |
GSM960851 | Jurkat_rep3_TiO2_24h_1 |
24h |
TiO2 1µg/ml |
Jurkat |
GSM960852 | Jurkat_rep3_TiO2_24h_10 |
24h |
TiO2 10µg/ml |
Jurkat |
GSM960853 | Jurkat_rep3_ZnO_6h_1 |
6h |
ZnO 1µg/ml |
Jurkat |
GSM960854 | Jurkat_rep3_ZnO_6h_10 |
6h |
ZnO 10µg/ml |
Jurkat |
GSM960855 | Jurkat_rep3_ZnO_24h_1 |
24h |
ZnO 1µg/ml |
Jurkat |
GSM960856 | Jurkat_rep3_ZnO_24h_10 |
24h |
ZnO 10µg/ml |
Jurkat |
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