Sample Set Annotation Tool: Gene expression profiles in T-lymphocytes and Monocytes of participants of the Tour de France 2005-GSE5105

Study Design
Assay
Sample Info
Files
Info
Samples
Group Sets
Analysis

Purpose

Hypothesis

Experimental Design

12 professional cyclists from two german top teams gave written agreement to participate to this study. We collected 12ml of whole blood at each time point and isolated T-lymphocytes out of 4ml and monocytes out of 8ml whole blood. The experimental groups are divided into rest (6 replicates in Tcells/ 7 replicates in Monocytes), start (10 replicates in each cell type) and final (8 replicates in Tcells/ 9 replicates in Monocytes). This means that we collected samples at the beginning and the end of the Tour de France and during the annual rest period of the athletes.

Experimental Variables

Controls

Methods

Additional Information

Büttner P, Vogt S, Heinrich L, Mosig S, Schmid A, Schubert YO, Dickhuth H,Brandenburg A, Jakob E, Baumstark M, Funke H

Expected Samples:

66 Samples Loaded: 66

Species

Human (Homo sapiens)

Sample Source

Monocytes

Disease

Healthy

Treatment Protocol

Growth Protocol

Extraction Protocol

Storage Conditions

Sample Set Spreadsheet

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Samples Preview

Sample ID	!Sample_title	Cell type
GSM115240	Blood withdrawal in Fromentine, human peripheral T-lymphocytes F3	T cell_Fromentine
GSM115241	Blood withdrawal in Fromentine, human peripheral T-lymphocytes F4	T cell_Fromentine
GSM115242	Blood withdrawal in Fromentine, human peripheral T-lymphocytes F5	T cell_Fromentine
GSM115243	Blood withdrawal in Fromentine, human peripheral T-lymphocytes F6	T cell_Fromentine
GSM115244	Blood withdrawal in Fromentine, human peripheral T-lymphocytes F8	T cell_Fromentine

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File
sampleset4000100_sampleannotations.csv Sample Set Spreadsheet

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Sample ID	!Sample Title	Cell type	Control	Blood withdrawal Fromentine, human peripheral T-lymphocytes	Blood withdrawal baseline, human peripheral T-lymphocytes	Blood withdrawal in Fromentine, human peripheral T-lymphocytes	Blood withdrawal in Fromentine, human peripheral T-lymphocytes	Peripheral monocytes
GSM115240	Blood withdrawal in Fromentine, human peripheral T-lymphocytes F3	T cell_Fromentine					True
GSM115241	Blood withdrawal in Fromentine, human peripheral T-lymphocytes F4	T cell_Fromentine					True
GSM115242	Blood withdrawal in Fromentine, human peripheral T-lymphocytes F5	T cell_Fromentine				True
GSM115243	Blood withdrawal in Fromentine, human peripheral T-lymphocytes F6	T cell_Fromentine				True
GSM115244	Blood withdrawal in Fromentine, human peripheral T-lymphocytes F8	T cell_Fromentine					True
GSM115245	Blood withdrawal in Fromentine, human peripheral T-lymphocytes F9	T cell_Fromentine				True
GSM115246	Blood withdrawal in Fromentine, human peripheral T-lymphocytes F7	T cell_Fromentine					True
GSM115247	Blood withdrawal in Fromentine, human peripheral T-lymphocytes F10	T cell_Fromentine					True
GSM115249	Blood withdrawal in St. Etienne, human peripheral T-lymphocytes E5	T cell_St. Etienne
GSM115251	Blood withdrawal in St. Etienne, human peripheral T-lymphocytes E6	T cell_St. Etienne
GSM115253	Blood withdrawal in St. Etienne, human peripheral T-lymphocytes E7	T cell_St. Etienne
GSM115254	Blood withdrawal baseline, human peripheral T-lymphocytes B5	T cell_baseline			True
GSM115256	Blood withdrawal baseline, human peripheral T-lymphocytes B1	T cell_baseline			True
GSM115258	Blood withdrawal baseline, human peripheral T-lymphocytes B3	T cell_baseline			True
GSM115260	Blood withdrawal baseline, human peripheral T-lymphocytes B2	T cell_baseline			True
GSM115261	Blood withdrawal baseline, human peripheral T-lymphocytes B4	T cell_baseline			True
GSM115263	Blood withdrawal baseline, human peripheral T-lymphocytes B6	T cell_baseline			True
GSM115265	Blood withdrawal in St. Etienne, human peripheral T-lymphocytes E8	T cell_St. Etienne
GSM115267	Blood withdrawal in St. Etienne, human peripheral T-lymphocytes E4	T cell_St. Etienne
GSM115268	Blood withdrawal in St. Etienne, human peripheral T-lymphocytes E3	T cell_St. Etienne
GSM115270	Blood withdrawal in St. Etienne, human peripheral T-lymphocytes E2	T cell_St. Etienne
GSM115272	Blood withdrawal in St. Etienne, human peripheral T-lymphocytes E1	T cell_St. Etienne
GSM115273	Blood withdrawal in Fromentine, human peripheral T-lymphocytes F2	T cell_Fromentine		True
GSM115275	Blood withdrawal in Fromentine, human peripheral T-lymphocytes F1	T cell_Fromentine		True
GSM116107	peripheral monocytes, E1 in St. Etienne	Monocyte_St. Etienne						True
GSM116108	peripheral monocytes, E2 in St. Etienne	Monocyte_St. Etienne						True
GSM116109	peripheral monocytes, E3 in St. Etienne	Monocyte_St. Etienne						True
GSM116110	peripheral monocytes, E4 in St. Etienne	Monocyte_St. Etienne						True
GSM116111	peripheral monocytes, E5 in St. Etienne	Monocyte_St. Etienne						True
GSM116112	peripheral monocytes, E6 in St. Etienne	Monocyte_St. Etienne						True
GSM116113	peripheral monocytes, E7 in St. Etienne	Monocyte_St. Etienne						True
GSM116114	peripheral monocytes, E8 in St. Etienne	Monocyte_St. Etienne						True
GSM116115	peripheral monocytes, E9 in St. Etienne	Monocyte_St. Etienne						True
GSM116116	peripheral monocytes, F1 in Fromentine	Monocyte_Fromentine						True
GSM116117	peripheral monocytes, F2 in Fromentine	Monocyte_Fromentine						True
GSM116118	peripheral monocytes, F3 in Fromentine	Monocyte_Fromentine						True
GSM116119	peripheral monocytes, F4 in Fromentine	Monocyte_Fromentine						True
GSM116120	peripheral monocytes, F5 in Fromentine	Monocyte_Fromentine						True
GSM116121	peripheral monocytes, F6 in Fromentine	Monocyte_Fromentine						True
GSM116122	peripheral monocytes, F7 in Fromentine	Monocyte_Fromentine						True
GSM116123	peripheral monocytes, F8 in Fromentine	Monocyte_Fromentine						True
GSM116124	peripheral monocytes, F9 in Fromentine	Monocyte_Fromentine						True
GSM116125	peripheral monocytes, F10 in Fromentine	Monocyte_Fromentine						True
GSM116126	peripheral monocytes, B1 Baseline	Monocyte_baseline						True
GSM116127	peripheral monocytes, B2 Baseline	Monocyte_baseline						True
GSM116128	peripheral monocytes, B3 Baseline	Monocyte_baseline						True
GSM116129	peripheral monocytes, B4 Baseline	Monocyte_baseline						True
GSM116130	peripheral monocytes, B5 Baseline	Monocyte_baseline						True
GSM116131	peripheral monocytes, B6 Baseline	Monocyte_baseline						True
GSM116132	peripheral monocytes, B7 Baseline	Monocyte_baseline						True
GSM118479	proband K3 Monocytes	Monocyte_control	True
GSM118480	proband K3 T-lymphocytes	T cell_control	True
GSM118481	proband K9 Monocytes	Monocyte_control	True
GSM118482	proband K2 T-lymphocytes	T cell_control	True
GSM118483	proband K2 Monocytes	Monocyte_control	True
GSM118484	proband K4 T-lymphocytes	T cell_control	True
GSM118485	proband K4 Monocytes	Monocyte_control	True
GSM118486	proband K1 T-lymphocytes	T cell_control	True
GSM118487	proband K8 Monocytes	Monocyte_control	True
GSM118488	proband K8 T-lymphocytes	T cell_control	True
GSM118489	proband K6 Monocytes	Monocyte_control	True
GSM118490	proband K6 T-lymphocytes	T cell_control	True
GSM118491	proband K7 Monocytes	Monocyte_control	True
GSM118492	proband K7 T-lymphocytes	T cell_control	True
GSM118493	proband K5 Monocytes	Monocyte_control	True
GSM118494	proband K5 T-lymphocytes	T cell_control	True

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