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Clinical

Subpopulations of CD163 positive macrophages are classically activated in psoriasis-GSE18686

Purpose

To determine the transcriptional profile associated with macrophage polarization to M1 or M2, we cultured macrophages derived from monocytes for 7 days and treated them with IFNg, IL-4, TNF, LPS, and LPS+IFNg (n=7). Psoriasis lesional and non-lesional skin biopsies were included (n=5 pairs).

Hypothesis

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Experimental Design

Comparison of the transcriptome of psoriasis with cytokine-treated macrophages.

Experimental Variables

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Controls

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Methods

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Additional Information
  • Fuentes-Duculan J, Suárez-Fariñas M, Zaba LC, Nograles KE et al. A subpopulation of CD163-positive macrophages is classically activated in psoriasis. J Invest Dermatol 2010 Oct;130(10):2412-22. PMID: 20555352
  • Microarray
    Illumina HumanHT-12 v3
    58 Samples Loaded: 58
    Human (Homo sapiens)
    Monocyte-derived macrophages (MDMs) , Macrophages
    Psoriasis
    Sample Set Spreadsheet
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    Samples Preview
    Sample ID !Sample_title cell type tissue treatment group disease status
    GSM464201 Macrophage culture, ID 1, Control cultured macrophages control
    GSM464202 Macrophage culture, ID 1, IL17 cultured macrophages IL17
    GSM464203 Macrophage culture, ID 1, IFNg cultured macrophages IFNg
    GSM464204 Macrophage culture, ID 1, IL4 cultured macrophages IL4
    GSM464205 Macrophage culture, ID 1, TNFa cultured macrophages TNFa
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    Log2 Transformed
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    Sample ID !Sample Title Cell type Tissue Treatment group Disease status Batch ID Line
    GSM464201
    Macrophage culture, ID 1, Control
    cultured macrophages
     
    control
     
    14
    1
    A
    GSM464202
    Macrophage culture, ID 1, IL17
    cultured macrophages
     
    IL17
     
    14
    1
    B
    GSM464203
    Macrophage culture, ID 1, IFNg
    cultured macrophages
     
    IFNg
     
    14
    1
    C
    GSM464204
    Macrophage culture, ID 1, IL4
    cultured macrophages
     
    IL4
     
    14
    1
    D
    GSM464205
    Macrophage culture, ID 1, TNFa
    cultured macrophages
     
    TNFa
     
    14
    1
    E
    GSM464206
    Macrophage culture, ID 1, LPS
    cultured macrophages
     
    LPS
     
    14
    1
    F
    GSM464207
    Macrophage culture, ID 1, LPSandIFNg
    cultured macrophages
     
    LPS and IFNg
     
    14
    1
    G
    GSM464208
    Macrophage culture, ID 2, Control
    cultured macrophages
     
    control
     
    14
    2
    H
    GSM464209
    Macrophage culture, ID 2, IL17
    cultured macrophages
     
    IL17
     
    14
    2
    I
    GSM464210
    Macrophage culture, ID 2, IFNg
    cultured macrophages
     
    IFNg
     
    14
    2
    J
    GSM464211
    Macrophage culture, ID 2, IL4
    cultured macrophages
     
    IL4
     
    14
    2
    K
    GSM464212
    Macrophage culture, ID 2, TNFa
    cultured macrophages
     
    TNFa
     
    14
    2
    L
    GSM464213
    Macrophage culture, ID 2, LPS
    cultured macrophages
     
    LPS
     
    16
    2
    A
    GSM464214
    Macrophage culture, ID 2, LPSandIFNg
    cultured macrophages
     
    LPS and IFNg
     
    16
    2
    B
    GSM464215
    Macrophage culture, ID 3, Control
    cultured macrophages
     
    control
     
    16
    3
    C
    GSM464216
    Macrophage culture, ID 3, IL17
    cultured macrophages
     
    IL17
     
    16
    3
    D
    GSM464217
    Macrophage culture, ID 3, IFNg
    cultured macrophages
     
    IFNg
     
    16
    3
    E
    GSM464218
    Macrophage culture, ID 3, IL4
    cultured macrophages
     
    IL4
     
    16
    3
    F
    GSM464219
    Macrophage culture, ID 3, TNFa
    cultured macrophages
     
    TNFa
     
    16
    3
    G
    GSM464220
    Macrophage culture, ID 3, LPS
    cultured macrophages
     
    LPS
     
    16
    3
    H
    GSM464221
    Macrophage culture, ID 3, LPSandIFNg
    cultured macrophages
     
    LPS and IFNg
     
    16
    3
    I
    GSM464222
    Macrophage culture, ID 4, Control
    cultured macrophages
     
    control
     
    16
    4
    J
    GSM464223
    Macrophage culture, ID 4, IL17
    cultured macrophages
     
    IL17
     
    16
    4
    K
    GSM464224
    Macrophage culture, ID 4, IFNg
    cultured macrophages
     
    IFNg
     
    16
    4
    L
    GSM464225
    Macrophage culture, ID 4, IL4
    cultured macrophages
     
    IL4
     
    69
    4
    A
    GSM464226
    Macrophage culture, ID 4, TNFa
    cultured macrophages
     
    TNFa
     
    69
    4
    B
    GSM464227
    Macrophage culture, ID 4, LPS
    cultured macrophages
     
    LPS
     
    69
    4
    C
    GSM464228
    Macrophage culture, ID 4, LPSandIFNg
    cultured macrophages
     
    LPS and IFNg
     
    69
    4
    D
    GSM464229
    Macrophage culture, ID 4, Control (rep)
    cultured macrophages
     
    control
     
    69
    4
    E
    GSM464230
    Macrophage culture, ID 4, IL17 (rep)
    cultured macrophages
     
    IL17
     
    69
    4
    F
    GSM464231
    Macrophage culture, ID 4, IFNg (rep)
    cultured macrophages
     
    IFNg
     
    69
    4
    G
    GSM464232
    Macrophage culture, ID 4, IL4 (rep)
    cultured macrophages
     
    IL4
     
    69
    4
    H
    GSM464233
    Macrophage culture, ID 4, TNFa (rep)
    cultured macrophages
     
    TNFa
     
    69
    4
    I
    GSM464234
    Macrophage culture, ID 4, LPS (rep)
    cultured macrophages
     
    LPS
     
    69
    4
    J
    GSM464235
    Macrophage culture, ID 4, LPSandIFNg (rep)
    cultured macrophages
     
    LPS and IFNg
     
    69
    4
    K
    GSM464236
    Macrophage culture, ID 5, Control
    cultured macrophages
     
    control
     
    71
    5
    A
    GSM464237
    Macrophage culture, ID 5, IL17
    cultured macrophages
     
    IL17
     
    71
    5
    B
    GSM464238
    Macrophage culture, ID 5, IFNg
    cultured macrophages
     
    IFNg
     
    71
    5
    C
    GSM464239
    Macrophage culture, ID 5, IL4
    cultured macrophages
     
    IL4
     
    71
    5
    D
    GSM464240
    Macrophage culture, ID 5, TNFa
    cultured macrophages
     
    TNFa
     
    71
    5
    E
    GSM464241
    Macrophage culture, ID 5, LPS
    cultured macrophages
     
    LPS
     
    71
    5
    F
    GSM464242
    Macrophage culture, ID 5, LPSandIFNg
    cultured macrophages
     
    LPS and IFNg
     
    71
    5
    G
    GSM464243
    Macrophage culture, ID 6, IL17
    cultured macrophages
     
    IL17
     
    71
    6
    I
    GSM464244
    Macrophage culture, ID 6, IFNg
    cultured macrophages
     
    IFNg
     
    71
    6
    J
    GSM464245
    Macrophage culture, ID 6, IL4
    cultured macrophages
     
    IL4
     
    71
    6
    K
    GSM464246
    Macrophage culture, ID 6, TNFa
    cultured macrophages
     
    TNFa
     
    71
    6
    L
    GSM464247
    Macrophage culture, ID 6, LPS
    cultured macrophages
     
    LPS
     
    71
    6
    A
    GSM464248
    Macrophage culture, ID 6, LPSandIFNg
    cultured macrophages
     
    LPS and IFNg
     
    35
    6
    B
    GSM464249
    Psoriasis skin, ID P 001, NL
     
    skin
    Non-Lesional
    non-lesional psoriasis
    35
    P 001
    C
    GSM464250
    Psoriasis skin, ID P 002, LS
     
    skin
    Lesional
    lesional psoriasis
    35
    P 001
    D
    GSM464251
    Psoriasis skin, ID P 003, NL
     
    skin
    Non-Lesional
    non-lesional psoriasis
    35
    P 002
    E
    GSM464252
    Psoriasis skin, ID P 004, LS
     
    skin
    Lesional
    lesional psoriasis
    35
    P 002
    F
    GSM464253
    Psoriasis skin, ID P 005, NL
     
    skin
    Non-Lesional
    non-lesional psoriasis
    35
    P 003
    G
    GSM464254
    Psoriasis skin, ID P 006, LS
     
    skin
    Lesional
    lesional psoriasis
    35
    P 003
    H
    GSM464255
    Psoriasis skin, ID P 007, NL
     
    skin
    Non-Lesional
    non-lesional psoriasis
    35
    P 004
    I
    GSM464256
    Psoriasis skin, ID P 008, LS
     
    skin
    Lesional
    lesional psoriasis
    35
    P 004
    J
    GSM464257
    Psoriasis skin, ID P 009, NL
     
    skin
    Non-Lesional
    non-lesional psoriasis
    35
    P 005
    K
    GSM464258
    Psoriasis skin, ID P 010, LS
     
    skin
    Lesional
    lesional psoriasis
    35
    P 005
    L

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