Expression data from intermediate monocytes from healthy donors and autoimmune uveitis patients-GSE66936
To compare the gene expression profiling 1) on intermediate monocytes CD14++CD16+ monocytes between healthy donors and autoimmune uveitis patients and 2) among 3 monocyte subsets in health donors
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Pheripharal blood from 5 autoimmune uveitis patients and 4 healthy donors were collected. Immediately after collection, we purified circulating intermediate CD14++CD16+ monocytes from 5 patients with autoimmune uveitis ( Sample 13-17; titled as P intermediate 1-5) and 4 healthy donors (Sample 1, 4, 7, 10; titled as HD intermediate 1-4) by flow cytometry and isolated total RNA to proceed microarray assay. In addition, we also purified CD14+CD16++ (Sample 3, 6, 9, 12; titled HD non-classical 1-4) and CD14++CD16- (Sample 2, 5, 8, 11; titled HD classical 1-4) from 4 healthy donors to do microarray.
Please note that data processing was performed in two groups;[1] HD intermediate, classical and non-classical samples (total 12 samples)[2] HD intermediate samples reanalyzed with P intermediate samples (total 9 samples).
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Sample ID | !Sample_title | tissue | tissue subtype | subject id | subject status |
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GSM1634594 | HD intermediate 1 | human peripheral monocytes | intermediate monocyte subset | donor1 | healthy donor |
GSM1634595 | HD classical 1 | human peripheral monocytes | classical monocyte subset | donor1 | healthy donor |
GSM1634596 | HD non-classical 1 | human peripheral monocytes | non-classical monocyte subset | donor1 | healthy donor |
GSM1634597 | HD intermediate 2 | human peripheral monocytes | intermediate monocyte subset | donor2 | healthy donor |
GSM1634598 | HD classical 2 | human peripheral monocytes | classical monocyte subset | donor2 | healthy donor |
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Sample ID | !Sample Title | Tissue | Tissue subtype | Subject id | Subject status | Monocyte subsets |
---|---|---|---|---|---|---|
GSM1634594 | HD intermediate 1 |
human peripheral monocytes |
intermediate monocyte subset |
donor1 |
healthy donor |
HD intermediate |
GSM1634595 | HD classical 1 |
human peripheral monocytes |
classical monocyte subset |
donor1 |
healthy donor |
HD classical |
GSM1634596 | HD non-classical 1 |
human peripheral monocytes |
non-classical monocyte subset |
donor1 |
healthy donor |
HD non-classical |
GSM1634597 | HD intermediate 2 |
human peripheral monocytes |
intermediate monocyte subset |
donor2 |
healthy donor |
HD intermediate |
GSM1634598 | HD classical 2 |
human peripheral monocytes |
classical monocyte subset |
donor2 |
healthy donor |
HD classical |
GSM1634599 | HD non-classical 2 |
human peripheral monocytes |
non-classical monocyte subset |
donor2 |
healthy donor |
HD non-classical |
GSM1634600 | HD intermediate 3 |
human peripheral monocytes |
intermediate monocyte subset |
donor3 |
healthy donor |
HD intermediate |
GSM1634601 | HD classical 3 |
human peripheral monocytes |
classical monocyte subset |
donor3 |
healthy donor |
HD classical |
GSM1634602 | HD non-classical 3 |
human peripheral monocytes |
non-classical monocyte subset |
donor3 |
healthy donor |
HD non-classical |
GSM1634603 | HD intermediate 4 |
human peripheral monocytes |
intermediate monocyte subset |
donor4 |
healthy donor |
HD intermediate |
GSM1634604 | HD classical 4 |
human peripheral monocytes |
classical monocyte subset |
donor4 |
healthy donor |
HD classical |
GSM1634605 | HD non-classical 4 |
human peripheral monocytes |
non-classical monocyte subset |
donor4 |
healthy donor |
HD non-classical |
GSM1634606 | HD intermediate 1 [re-analysis] |
human peripheral monocytes |
intermediate monocyte subset |
donor1 |
healthy donor |
HD intermediate |
GSM1634607 | HD intermediate 2 [re-analysis] |
human peripheral monocytes |
intermediate monocyte subset |
donor2 |
healthy donor |
HD intermediate |
GSM1634608 | HD intermediate 3 [re-analysis] |
human peripheral monocytes |
intermediate monocyte subset |
donor3 |
healthy donor |
HD intermediate |
GSM1634609 | HD intermediate 4 [re-analysis] |
human peripheral monocytes |
intermediate monocyte subset |
donor4 |
healthy donor |
HD intermediate |
GSM1634610 | P intermediate 1 |
human peripheral monocytes |
intermediate monocyte subset |
patient 1 |
autoimmune uveitis patient |
P intermediate |
GSM1634611 | P intermediate 2 |
human peripheral monocytes |
intermediate monocyte subset |
patient 2 |
autoimmune uveitis patient |
P intermediate |
GSM1634612 | P intermediate 3 |
human peripheral monocytes |
intermediate monocyte subset |
patient 3 |
autoimmune uveitis patient |
P intermediate |
GSM1634613 | P intermediate 4 |
human peripheral monocytes |
intermediate monocyte subset |
patient 4 |
autoimmune uveitis patient |
P intermediate |
GSM1634614 | P intermediate 5 |
human peripheral monocytes |
intermediate monocyte subset |
patient 5 |
autoimmune uveitis patient |
P intermediate |
Name | ||
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