Sample Set Annotation Tool: Tumor-educated circulating monocytes are powerful specific biomarkers for diagnosis of colorectal cancer-GSE47756

Study Design
Assay
Sample Info
Files
Info
Samples
Group Sets
Analysis

Purpose

Analysis of tumor-educated changes in peripheral blood monocytes at the gene expression level.

Hypothesis

Experimental Design

Peripheral blood monocytes from 93 distinct individuals are profiled on 8 beadchips. The individuals belong to one of three groups: healthy volunteers (38), patients with non-metastatic colorectal cancer (27) or patients with metastatic colorectal cancer (28).

Experimental Variables

Controls

Methods

Additional Information

Hamm A, Prenen H, Van Delm W, Di Matteo M et al. Tumour-educated circulating monocytes are powerful candidate biomarkers for diagnosis and disease follow-up of colorectal cancer. Gut 2015 Mar 26. PMID: 25814648

Expected Samples:

93 Samples Loaded: 93

Species

Human (Homo sapiens)

Sample Source

Monocytes

Disease

Colorectal cancer

Treatment Protocol

Growth Protocol

Extraction Protocol

Storage Conditions

Sample Set Spreadsheet

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Samples Preview

Sample ID	Age	Gender	!Sample_title	tumor stage
GSM1156513	73	F	PBM_PM_Nb49	metastatic patient
GSM1156514	57	F	PBM_P_Nb51	non-metastatic patient
GSM1156515	58	F	PBM_P_Nb52	non-metastatic patient
GSM1156516	45	F	PBM_PM_Nb53	metastatic patient
GSM1156517	73	M	PBM_PM_Nb54	metastatic patient

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File

Samples Viewer / Editor

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Sample ID	Age	Gender	!Sample Title	Tumor stage
GSM1156513	73	F	PBM_PM_Nb49	metastatic patient
GSM1156514	57	F	PBM_P_Nb51	non-metastatic patient
GSM1156515	58	F	PBM_P_Nb52	non-metastatic patient
GSM1156516	45	F	PBM_PM_Nb53	metastatic patient
GSM1156517	73	M	PBM_PM_Nb54	metastatic patient
GSM1156518	58	F	PBM_PM_Nb55	metastatic patient
GSM1156519	70	M	PBM_P_Nb56	non-metastatic patient
GSM1156520	77	F	PBM_P_Nb57	non-metastatic patient
GSM1156521	44	M	PBM_PM_Nb58	metastatic patient
GSM1156522	75	F	PBM_P_Nb59	non-metastatic patient
GSM1156523	51	F	PBM_PM_Nb60	metastatic patient
GSM1156524	54	M	PBM_PM_Nb61	metastatic patient
GSM1156525	87	M	PBM_P_Nb2	non-metastatic patient
GSM1156526	59	M	PBM_PM_Nb7	metastatic patient
GSM1156527	60	M	PBM_PM_Nb10	metastatic patient
GSM1156528	67	M	PBM_P_Nb26	non-metastatic patient
GSM1156529	49	M	PBM_P_Nb34	non-metastatic patient
GSM1156530	52	F	PBM_PM_Nb36	metastatic patient
GSM1156531	54	F	PBM_P_Nb38	non-metastatic patient
GSM1156532	45	F	PBM_P_Nb41	non-metastatic patient
GSM1156533	45	F	PBM_P_Nb42	non-metastatic patient
GSM1156534	53	M	PBM_PM_Nb45	metastatic patient
GSM1156535	58	M	PBM_PM_Nb46	metastatic patient
GSM1156536	75	F	PBM_P_Nb47	non-metastatic patient
GSM1156537	65	M	PBM_HV_Nb27	healthy volunteer
GSM1156538	41	F	PBM_HV_Nb28	healthy volunteer
GSM1156539	42	M	PBM_HV_Nb29	healthy volunteer
GSM1156540	63	M	PBM_HV_Nb30	healthy volunteer
GSM1156541	53	M	PBM_HV_Nb31	healthy volunteer
GSM1156542	41	F	PBM_HV_Nb32	healthy volunteer
GSM1156543	43	F	PBM_HV_Nb33	healthy volunteer
GSM1156544	45	F	PBM_HV_Nb34	healthy volunteer
GSM1156545	49	F	PBM_HV_Nb35	healthy volunteer
GSM1156546	44	F	PBM_HV_Nb36	healthy volunteer
GSM1156547	59	F	PBM_HV_Nb37	healthy volunteer
GSM1156548	50	F	PBM_HV_Nb38	healthy volunteer
GSM1156549	63	F	PBM_PM_Nb62	metastatic patient
GSM1156550	66	M	PBM_HV_Nb4	healthy volunteer
GSM1156551	64	F	PBM_HV_Nb2	healthy volunteer
GSM1156552	77	F	PBM_HV_Nb6	healthy volunteer
GSM1156553	52	F	PBM_HV_Nb19	healthy volunteer
GSM1156554	45	M	PBM_HV_Nb20	healthy volunteer
GSM1156555	48	F	PBM_HV_Nb21	healthy volunteer
GSM1156556	55	M	PBM_HV_Nb22	healthy volunteer
GSM1156557	47	M	PBM_HV_Nb23	healthy volunteer
GSM1156558	45	F	PBM_HV_Nb24	healthy volunteer
GSM1156559	48	F	PBM_HV_Nb25	healthy volunteer
GSM1156560	43	F	PBM_HV_Nb26	healthy volunteer
GSM1156561	72	F	PBM_PM_Nb43	metastatic patient
GSM1156562	64	F	PBM_HV_Nb1	healthy volunteer
GSM1156563	58	M	PBM_HV_Nb3	healthy volunteer
GSM1156564	70	F	PBM_HV_Nb5	healthy volunteer
GSM1156565	74	F	PBM_HV_Nb7	healthy volunteer
GSM1156566	77	M	PBM_HV_Nb8	healthy volunteer
GSM1156567	46	F	PBM_HV_Nb9	healthy volunteer
GSM1156568	79	M	PBM_HV_Nb10	healthy volunteer
GSM1156569	78	M	PBM_HV_Nb11	healthy volunteer
GSM1156570	63	F	PBM_HV_Nb13	healthy volunteer
GSM1156571	65	F	PBM_HV_Nb14	healthy volunteer
GSM1156572	42	F	PBM_HV_Nb15	healthy volunteer
GSM1156573	72	F	PBM_HV_Nb16	healthy volunteer
GSM1156574	64	F	PBM_HV_Nb17	healthy volunteer
GSM1156575	---	---	PBM_PM_Nb63	metastatic patient
GSM1156576	---	---	PBM_PM_Nb64	metastatic patient
GSM1156577	---	---	PBM_HV_Nb39	healthy volunteer
GSM1156578	---	---	PBM_HV_Nb40	healthy volunteer
GSM1156579	65	F	PBM_P_Nb9	non-metastatic patient
GSM1156580	71	F	PBM_PM_Nb37	metastatic patient
GSM1156581	74	M	PBM_P_Nb48	non-metastatic patient
GSM1156582	76	F	PBM_PM_Nb1	metastatic patient
GSM1156583	75	F	PBM_PM_Nb3	metastatic patient
GSM1156584	78	M	PBM_P_Nb4	non-metastatic patient
GSM1156585	65	F	PBM_P_Nb5	non-metastatic patient
GSM1156586	67	M	PBM_P_Nb6	non-metastatic patient
GSM1156587	66	F	PBM_PM_Nb11	metastatic patient
GSM1156588	49	F	PBM_P_Nb12	non-metastatic patient
GSM1156589	69	F	PBM_PM_Nb13	metastatic patient
GSM1156590	73	M	PBM_P_Nb14	non-metastatic patient
GSM1156591	64	F	PBM_PM_Nb15	metastatic patient
GSM1156592	46	F	PBM_PM_Nb16	metastatic patient
GSM1156593	78	M	PBM_PM_Nb17	metastatic patient
GSM1156594	77	M	PBM_P_Nb18	non-metastatic patient
GSM1156595	67	M	PBM_P_Nb20	non-metastatic patient
GSM1156596	79	M	PBM_P_Nb21	non-metastatic patient
GSM1156597	68	F	PBM_P_Nb22	non-metastatic patient
GSM1156598	---	---	PBM_PM_Nb23	metastatic patient
GSM1156599	71	F	PBM_P_Nb24	non-metastatic patient
GSM1156600	65	F	PBM_PM_Nb25	metastatic patient
GSM1156601	62	F	PBM_PM_Nb27	metastatic patient
GSM1156602	65	F	PBM_PM_Nb28	metastatic patient
GSM1156603	65	F	PBM_P_Nb31	non-metastatic patient
GSM1156604	81	M	PBM_P_Nb39	non-metastatic patient
GSM1156605	45	F	PBM_P_Nb40	non-metastatic patient

Group Sets View in Gene Expression Browser

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Module Analysis

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