Sample Set Annotation Tool: Interleukin-1- and Type I Interferon-Dependent Enhanced Immunogenicity of an NYVAC-HIV-1 Env-Gag-Pol-Nef Vaccine Vector with Dual Deletions of Type I and Type II Interferon-Binding Proteins-GSE65412

Study Design
Assay
Sample Info
Files
Info
Samples
Group Sets
Analysis

Purpose

Hypothesis

Experimental Design

Primary Human monocytes from 5 donors were incubated with each following vectors nyvacdb, nyvadb19r, nyvaccdb8rb19r_6h, untreated control and collected at 6h.

Experimental Variables

Controls

Methods

Primary monocytes

Additional Information

Delaloye J, Filali-Mouhim A, Cameron MJ, Haddad EK et al. Interleukin-1- and type I interferon-dependent enhanced immunogenicity of an NYVAC-HIV-1 Env-Gag-Pol-Nef vaccine vector with dual deletions of type I and type II interferon-binding proteins. J Virol 2015 Apr;89(7):3819-32. PMID: 25609807

Expected Samples:

20 Samples Loaded: 20

Species

Human (Homo sapiens)

Sample Source

Monocytes

Disease

Vaccination

Treatment Protocol

Growth Protocol

Extraction Protocol

Storage Conditions

Sample Set Spreadsheet

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Samples Preview

Sample ID	!Sample_title	donor id	timepoint	cell type	sample group
GSM1595760	control Donor 1 [5727946083_B]	donor 1	0hr	primary human monocytes	control
GSM1595761	control Donor 2 [5826629001_J]	donor 2	0hr	primary human monocytes	control
GSM1595762	control Donor 3 [5826629022_E]	donor 3	0hr	primary human monocytes	control
GSM1595763	control Donor 4 [5826629089_F]	donor 4	0hr	primary human monocytes	control
GSM1595764	control Donor 5 [5826629031_C]	donor 5	0hr	primary human monocytes	control

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Sample ID	!Sample Title	Donor id	Timepoint	Cell type	Sample group	Infected with
GSM1595760	control Donor 1 [5727946083_B]	donor 1	0hr	primary human monocytes	control	none (control)
GSM1595761	control Donor 2 [5826629001_J]	donor 2	0hr	primary human monocytes	control	none (control)
GSM1595762	control Donor 3 [5826629022_E]	donor 3	0hr	primary human monocytes	control	none (control)
GSM1595763	control Donor 4 [5826629089_F]	donor 4	0hr	primary human monocytes	control	none (control)
GSM1595764	control Donor 5 [5826629031_C]	donor 5	0hr	primary human monocytes	control	none (control)
GSM1595765	nyvacc_6h Donor 1 [5727946083_E]	donor 1	6hrs	primary human monocytes	infected	nyvacc for 1hr
GSM1595766	nyvacc_6h Donor 2 [5826629022_I]	donor 2	6hrs	primary human monocytes	infected	nyvacc for 1hr
GSM1595767	nyvacc_6h Donor 3 [5727946083_C]	donor 3	6hrs	primary human monocytes	infected	nyvacc for 1hr
GSM1595768	nyvacc_6h Donor 4 [5826629022_H]	donor 4	6hrs	primary human monocytes	infected	nyvacc for 1hr
GSM1595769	nyvacc_6h Donor 5 [5826629029_C]	donor 5	6hrs	primary human monocytes	infected	nyvacc for 1hr
GSM1595770	nyvaccdb19r_6h Donor 1 [5727946084_B]	donor 1	6hrs	primary human monocytes	infected	nyvaccdb19r for 1hr
GSM1595771	nyvaccdb19r_6h Donor 2 [5727946083_I]	donor 2	6hrs	primary human monocytes	infected	nyvaccdb19r for 1hr
GSM1595772	nyvaccdb19r_6h Donor 3 [5727946083_L]	donor 3	6hrs	primary human monocytes	infected	nyvaccdb19r for 1hr
GSM1595773	nyvaccdb19r_6h Donor 4 [5826629001_C]	donor 4	6hrs	primary human monocytes	infected	nyvaccdb19r for 1hr
GSM1595774	nyvaccdb19r_6h Donor 5 [5826629025_D]	donor 5	6hrs	primary human monocytes	infected	nyvaccdb19r for 1hr
GSM1595775	nyvaccdb8rb19r_6h Donor 1 [5727946084_I]	donor 1	6hrs	primary human monocytes	infected	nyvaccd8rb19r for 1hr
GSM1595776	nyvaccdb8rb19r_6h Donor 2 [5727946084_K]	donor 2	6hrs	primary human monocytes	infected	nyvaccd8rb19r for 1hr
GSM1595777	nyvaccdb8rb19r_6h Donor 3 [5826629022_C]	donor 3	6hrs	primary human monocytes	infected	nyvaccd8rb19r for 1hr
GSM1595778	nyvaccdb8rb19r_6h Donor 4 [5727946084_F]	donor 4	6hrs	primary human monocytes	infected	nyvaccd8rb19r for 1hr
GSM1595779	nyvaccdb8rb19r_6h Donor 5 [5826629001_K]	donor 5	6hrs	primary human monocytes	infected	nyvaccd8rb19r for 1hr

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