Sample Set Annotation Tool: Activation of the JAK/STAT pathway in Behcet’s Disease-GSE61399

Study Design
Assay
Sample Info
Files
Info
Samples
Group Sets
Analysis

Purpose

Hypothesis

Experimental Design

Gene expression profile from two cell types sorted from PBMCs: CD4+ and CD14+. CD4+ profiling has 3 controls and 9 patients samples, CD14+ has 9 controls and 8 patients samples.

Experimental Variables

Controls

Methods

Additional Information

Expected Samples:

29 Samples Loaded: 29

Species

Human (Homo sapiens)

Sample Source

CD4 T cells , Monocytes

Disease

Behcet Syndrome

Treatment Protocol

Growth Protocol

Extraction Protocol

Storage Conditions

Sample Set Spreadsheet

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Samples Preview

Sample ID	!Sample_title	cell type	disease status	Grouping
GSM1503928	Healthy-CD4_cells-replicate_1	CD4	healthy	CD4-Healthy
GSM1503929	Healthy-CD4_cells-replicate_2	CD4	healthy	CD4-Healthy
GSM1503930	Healthy-CD4_cells-replicate_3	CD4	healthy	CD4-Healthy
GSM1503931	Bechets_disease-CD4_cells-replicate_1	CD4	Bechets_disease	CD4-Bechets
GSM1503932	Bechets_disease-CD4_cells-replicate_2	CD4	Bechets_disease	CD4-Bechets

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File
sampleset4000048_sampleannotations.csv Sample Set Spreadsheet

Samples Viewer / Editor

All fields are editable except the "Sample ID" column. To edit a cell, click within the cell. To edit a "date" cell, click on the calendar icon. To cancel an edit, press the ESC key.

Sample ID	!Sample Title	Cell type	Disease status	Grouping
GSM1503928	Healthy-CD4_cells-replicate_1	CD4	healthy	CD4-Healthy
GSM1503929	Healthy-CD4_cells-replicate_2	CD4	healthy	CD4-Healthy
GSM1503930	Healthy-CD4_cells-replicate_3	CD4	healthy	CD4-Healthy
GSM1503931	Bechets_disease-CD4_cells-replicate_1	CD4	Bechets_disease	CD4-Bechets
GSM1503932	Bechets_disease-CD4_cells-replicate_2	CD4	Bechets_disease	CD4-Bechets
GSM1503933	Bechets_disease-CD4_cells-replicate_3	CD4	Bechets_disease	CD4-Bechets
GSM1503934	Bechets_disease-CD4_cells-replicate_4	CD4	Bechets_disease	CD4-Bechets
GSM1503935	Bechets_disease-CD4_cells-replicate_5	CD4	Bechets_disease	CD4-Bechets
GSM1503936	Bechets_disease-CD4_cells-replicate_6	CD4	Bechets_disease	CD4-Bechets
GSM1503937	Bechets_disease-CD4_cells-replicate_7	CD4	Bechets_disease	CD4-Bechets
GSM1503938	Bechets_disease-CD4_cells-replicate_8	CD4	Bechets_disease	CD4-Bechets
GSM1503939	Bechets_disease-CD4_cells-replicate_9	CD4	Bechets_disease	CD4-Bechets
GSM1503940	Healthy-CD14_cells-replicate_1	CD14	healthy	CD14-Healthy
GSM1503941	Healthy-CD14_cells-replicate_2	CD14	healthy	CD14-Healthy
GSM1503942	Healthy-CD14_cells-replicate_3	CD14	healthy	CD14-Healthy
GSM1503943	Healthy-CD14_cells-replicate_4	CD14	healthy	CD14-Healthy
GSM1503944	Healthy-CD14_cells-replicate_5	CD14	healthy	CD14-Healthy
GSM1503945	Healthy-CD14_cells-replicate_6	CD14	healthy	CD14-Healthy
GSM1503946	Healthy-CD14_cells-replicate_7	CD14	healthy	CD14-Healthy
GSM1503947	Healthy-CD14_cells-replicate_8	CD14	healthy	CD14-Healthy
GSM1503948	Healthy-CD14_cells-replicate_9	CD14	healthy	CD14-Healthy
GSM1503949	Bechets_disease-CD14_cells-replicate_1	CD14	Bechets_disease	CD14-Bechets
GSM1503950	Bechets_disease-CD14_cells-replicate_2	CD14	Bechets_disease	CD14-Bechets
GSM1503952	Bechets_disease-CD14_cells-replicate_4	CD14	Bechets_disease	CD14-Bechets
GSM1503953	Bechets_disease-CD14_cells-replicate_5	CD14	Bechets_disease	CD14-Bechets
GSM1503954	Bechets_disease-CD14_cells-replicate_6	CD14	Bechets_disease	CD14-Bechets
GSM1503955	Bechets_disease-CD14_cells-replicate_7	CD14	Bechets_disease	CD14-Bechets
GSM1503956	Bechets_disease-CD14_cells-replicate_8	CD14	Bechets_disease	CD14-Bechets
GSM1503957	Bechets_disease-CD14_cells-replicate_9	CD14	Bechets_disease	CD14-Bechets

Group Sets View in Gene Expression Browser

Name
All Samples		View
Cell Type	Default	View
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Module Analysis

Group Set
All Samples
Cell Type

SIDRA