Sample Set Annotation Tool: Loss-of-function mutations in REP-1 affect intracellular vesicle transport in fibroblasts and monocytes of CHM patients-GSE17549

Study Design
Assay
Sample Info
Files
Info
Samples
Group Sets
Analysis

Purpose

Hypothesis

Experimental Design

Expression data were collected from 6 CHM patients' monocytes and 4 CHM primary fibroblasts cultures, monocytes or FB from 5 normal age-matched subjects were used as a control

Experimental Variables

Controls

Methods

Additional Information

Strunnikova NV, Barb J, Sergeev YV, Thiagarajasubramanian A et al. Loss-of-function mutations in Rab escort protein 1 (REP-1) affect intracellular transport in fibroblasts and monocytes of choroideremia patients. PLoS One 2009 Dec 22;4(12):e8402. PMID: 20027300

Expected Samples:

15 Samples Loaded: 15

Species

Human (Homo sapiens)

Sample Source

Monocytes , Fibroblast

Disease

Choroideremia

Treatment Protocol

Growth Protocol

Extraction Protocol

Storage Conditions

Sample Set Spreadsheet

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Samples Preview

Sample ID	!Sample_title	cell type	Conditions	disease
GSM437494	CHM_CD14_10	peripheral blood monocytes	CD14-Choroideremia	choroideremia
GSM437495	CHM_CD14_13	peripheral blood monocytes	CD14-Choroideremia	choroideremia
GSM437496	CHM_CD14_15	peripheral blood monocytes	CD14-Choroideremia	choroideremia
GSM437497	CHM_FB_19	primary fibroblasts cultures	Fibroblast-Choroideremia	choroideremia
GSM437498	CHM_FB_21	primary fibroblasts cultures	Fibroblast-Choroideremia	choroideremia

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File
sampleset4000092_sampleannotations.csv Sample Set Spreadsheet

Samples Viewer / Editor

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Sample ID	!Sample Title	Cell type	Conditions	Disease
GSM437494	CHM_CD14_10	peripheral blood monocytes	CD14-Choroideremia	choroideremia
GSM437495	CHM_CD14_13	peripheral blood monocytes	CD14-Choroideremia	choroideremia
GSM437496	CHM_CD14_15	peripheral blood monocytes	CD14-Choroideremia	choroideremia
GSM437497	CHM_FB_19	primary fibroblasts cultures	Fibroblast-Choroideremia	choroideremia
GSM437498	CHM_FB_21	primary fibroblasts cultures	Fibroblast-Choroideremia	choroideremia
GSM437499	CHM_FB_26	primary fibroblasts cultures	Fibroblast-Choroideremia	choroideremia
GSM437500	CHM_FB_27	primary fibroblasts cultures	Fibroblast-Choroideremia	choroideremia
GSM437501	CHM_CD14_29	peripheral blood monocytes	CD14-Choroideremia	choroideremia
GSM437502	CHM_CD14_7	peripheral blood monocytes	CD14-Choroideremia	choroideremia
GSM437503	CHM_CD14_9	peripheral blood monocytes	CD14-Choroideremia	choroideremia
GSM437504	CONT_CD14_1	peripheral blood monocytes	CD14-Healthy	normal
GSM437505	CONT_FB_18	primary fibroblasts cultures	Fibroblast-Healthy	normal
GSM437506	CONT_CD14_2	peripheral blood monocytes	CD14-Healthy	normal
GSM437507	CONT_CD14_3	peripheral blood monocytes	CD14-Healthy	normal
GSM437508	CONT_CD14_14	peripheral blood monocytes	CD14-Healthy	normal

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SIDRA